BtaEX0018832 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001899 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr2:34112078-34131846:+
Coord C1 exon
chr2:34112078-34112277
Coord A exon
chr2:34127576-34127578
Coord C2 exon
chr2:34131594-34131846
Length
3 bp
Sequences
Splice sites
3' ss Seq
CTATTCGAATGCTAAATGAGGAA
3' ss Score
-10.62
5' ss Seq
GAAGTTCCA
5' ss Score
-16.18
Exon sequences
Seq C1 exon
CATTAATGTATGCAAGCATTTTTGGGAATGTATCTGCAATTATCCAAAGACTATACTCGGGAACTGCCAGGTACCACATGCAGATGCTTCGAGTAAAAGAGTTCATTCGCTTTCACCAAATCCCCAACCCTCTGAGGCAACGGCTTGAAGAATATTTCCAGCACGCATGGACTTACACCAATGGCATTGACATGAACATG
Seq A exon
GAA
Seq C2 exon
GTCCTAAAGGGTTTCCCAGAATGTTTACAAGCTGACATTTGTCTACATCTCAACCAGACTTTGCTGCAAAACTGCAAAGCCTTTCGGGGGGCAAGTAAAGGTTGCCTTAGAGCTTTGGCAATGAAGTTCAAGACCACCCATGCACCTCCAGGAGACACCCTGGTTCACTGTGGGGATGTCCTCACTGCGCTTTATTTCTTATCCAGAGGCTCCATTGAAATCCTCAAAGATGACATTGTGGTAGCTATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001899-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.8=14.9)
A:
NO
C2:
PF0002724=cNMP_binding=PU(45.5=47.1)
Main Inclusion Isoform:
ENSBTAT00000002469fB3553
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGCATGGACTTACACCAA
R:
TGCAGCAAAGTCTGGTTGAGA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development