MmuALTD0007348-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000058740 | Kcnt1
Description
potassium channel, subfamily T, member 1 [Source:MGI Symbol;Acc:MGI:1924627]
Coordinates
chr2:25900891-25901358:+
Coord C1 exon
chr2:25900891-25900997
Coord A exon
chr2:25900998-25901056
Coord C2 exon
chr2:25901209-25901358
Length
59 bp
Sequences
Splice sites
5' ss Seq
AAGGCAGGG
5' ss Score
1
3' ss Seq
TTACCCTAGTCCTCTGGCAGGGA
3' ss Score
3.37
Exon sequences
Seq C1 exon
CACGTGGTATGCGAGGAAGAGTGCAAGTACGCCATGCTGGCCCTGAACTGCATCTGCCCGGCCACCTCCACCCTCATCACCCTGCTGGTGCACACGTCCCGTGGCCA
Seq A exon
GTGAGTGCCCTGTGCCAGACCGACTACCACGCCCTGGTCATCCCGATCAACCCCACAAG
Seq C2 exon
GGAAGGACAGGAGTCTCCCGAGCAGTGGCAGCGCACGTACGGGAGGTGCTCGGGCAACGAGGTGTACCACATTCGCATGGGTGACAGTAAATTCTTCCGGGAGTATGAGGGCAAGAGCTTCACCTACGCAGCCTTCCACGCGCACAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058740-26-39,27-39-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(34.0=100)
A:
NA
C2:
PF0349313=BK_channel_a=FE(47.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTGGTATGCGAGGAAGAG
R:
CTGCTCGGGAGACTCCTGTC
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types