MmuALTD0007977-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026792 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:MGI Symbol;Acc:MGI:2684789]
Coordinates
chr2:32938797-32940340:-
Coord C1 exon
chr2:32940241-32940340
Coord A exon
NA
Coord C2 exon
chr2:32938797-32938884
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTTTTTTTTTTTTCTGGCAGCAT
3' ss Score
9.22
Exon sequences
Seq C1 exon
CCGCCATGCAGCAGATGCTGACGGAGAGCTGTAAGAGCCGGCTCATCCAGATGGCCTATGAGTCTCAGAGGCAGAGCCTGGCGCAGCAGGCCTGTTCCAG
Seq A exon
NA
Seq C2 exon
CATGGCTGAAATGGACAAGCGGTTCCAGCAGATTCTGTCTTGGCAGCAGATGGATCAGAACAAAGCCATCAGCCAGATCCTTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026792-35-34,36-34-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGACGGAGAGCTGTAAGA
R:
CGCTTGTCCATTTCAGCCATG
Band lengths:
106-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types