MmuALTD0008601-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026743 | Mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:MGI Symbol;Acc:MGI:1329038]
Coordinates
chr2:18092168-18092834:+
Coord C1 exon
chr2:18092168-18092314
Coord A exon
chr2:18092315-18092360
Coord C2 exon
chr2:18092784-18092834
Length
46 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
GTCAGTGTTTTCTTTTATAGTTG
3' ss Score
7.98
Exon sequences
Seq C1 exon
CTCTCTACTCAGTGCTGGTCTCCCTTGTGAGCTCTAGCCACCTTGGCTTCCTTGGACTCCCAGCTCCATTTCCTCAACTTGGGGAGACCACAGGCCCTGTCTGGGTTCCTCCTCCTTGTTCCTCGGCCTGAAAACTCTCCCAAGGCA
Seq A exon
GTAAGCTGGGCACTTTTGTGGCTGTGTCATGTTTCTTGTCTCTCAG
Seq C2 exon
TTGTTGCTTACTGTGAGCTAAGACACTTTGCCTAACCCTGAAGTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026743-14-19,15-19-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138321=zf-HC5HC2H_2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTTGGCTTCCTTGGACTC
R:
GGCAAAGTGTCTTAGCTCACAGT
Band lengths:
141-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types