MmuALTD0008602-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026743 | Mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:MGI Symbol;Acc:MGI:1329038]
Coordinates
chr2:18129573-18146872:+
Coord C1 exon
chr2:18129573-18131133
Coord A exon
NA
Coord C2 exon
chr2:18146777-18146872
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
3' ss Seq
TTACTTCTGTTTATTTTTAGAAA
3' ss Score
9.92
Exon sequences
Seq C1 exon
TTCAGGGAACTTCCTGCGTGACCAAAGCTTTATTACAATGGTTTAAGAAATACAGGTGATTGAGGCACGTGCCTTTAATCATAGTACTAGGGAGGCAAAACAAACAGAGCACCCTGGTCTGTATAGTGAGTTTTAGGTCAGCCAGAAATACACATTGAGACAATTGATTAGAGATGGCTCACTGGGATACAGTGAGGGCCTAAGTTCAGTTCAACACCCAGCACTGAGGTGAAAGCCAGGTGTAGTCGTGCTTGCCTGTAAATGTATGGTGGAGGAGGGAGAAACAGGTGGATCTTTGGGGGATCTCATTGGCCATCTAGTTTGGCTGAACTTAACACGAATCACCTGTCAATTAAAAAAAAAAAAAACCACCTGTGCACTGAGGCAGGAACTAGTTGATGGGATATGGGTAGGACGAGACAGTATTCTGGAATATAGTGAGAGGCGGAGAAGATAGCAGCGAGATGCTGAGGAAGGAGCAGGCCGGGGCTGAAGGAGAG
Seq A exon
NA
Seq C2 exon
AAATATAAAGAAAAGGACAAACACAAACAAAAACACAAGAAGCAACCAGAACCGTCACCTGCCTTGGTTCCTTCTTTGACTGTTACTACAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026743-30-49,31-49,32-49-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.955
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF105004=SR-25=PD(26.9=65.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCGGAGAAGATAGCAGC
R:
GTGACGGTTCTGGTTGCTTCT
Band lengths:
118-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types