MmuALTD0008832-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:108082203-108082660:+
Coord C1 exon
chr9:108082203-108082321
Coord A exon
chr9:108082322-108082390
Coord C2 exon
chr9:108082465-108082660
Length
69 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTA
5' ss Score
6.36
3' ss Seq
CAATTCCAGTTTTCGGTCAGGGC
3' ss Score
-0.18
Exon sequences
Seq C1 exon
GTTCCTAGACAAAGATCTGAAAGACAACTATTGTCGTAATCCGGACGGATCTGAGCGGCCCTGGTGCTACACCACAGACCCGAATGTTGAGCGAGAATTCTGCGACCTGCCCAGTTGCG
Seq A exon
GTAGGCTGCAGGGTCAGGGTCTAGGAAGGAGCTTGGAAAAAACTGGCGGGCACGGTTCAACTGGGAGAG
Seq C2 exon
GGCCTAACCTGCCTCCGACCGTCAAAGGATCCAAGTCACAGCGGCGCAACAAGGGCAAGGCTCTTAACTGCTTCCGCGGAAAAGGTGAAGACTATCGAGGCACAACCAATACCACCTCTGCGGGCGTGCCCTGCCAGCGGTGGGATGCGCAGAGTCCACACCAGCACCGCTTTGTGCCAGAGAAATATGCTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591-9-9,10-9,11-9-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.204
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(50.0=95.1)
A:
NA
C2:
PF0005113=Kringle=PU(53.2=63.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACACCACAGACCCGAATG
R:
CCGCAGAGGTGGTATTGGTTG
Band lengths:
177-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types