MmuINT0101367 @ mm10
Intron Retention
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:108082203-108082660:+
Coord C1 exon
chr9:108082203-108082321
Coord A exon
chr9:108082322-108082464
Coord C2 exon
chr9:108082465-108082660
Length
143 bp
Sequences
Splice sites
5' ss Seq
GCGGTAGGC
5' ss Score
7.2
3' ss Seq
CAATTCCAGTTTTCGGTCAGGGC
3' ss Score
-0.18
Exon sequences
Seq C1 exon
GTTCCTAGACAAAGATCTGAAAGACAACTATTGTCGTAATCCGGACGGATCTGAGCGGCCCTGGTGCTACACCACAGACCCGAATGTTGAGCGAGAATTCTGCGACCTGCCCAGTTGCG
Seq A exon
GTAGGCTGCAGGGTCAGGGTCTAGGAAGGAGCTTGGAAAAAACTGGCGGGCACGGTTCAACTGGGAGAGGTACTAGGGAAGTTAGGCGTGGGTAGAGAGCAAAGCCTGCTGAGTACCAGAGACCAATTCCAGTTTTCGGTCAG
Seq C2 exon
GGCCTAACCTGCCTCCGACCGTCAAAGGATCCAAGTCACAGCGGCGCAACAAGGGCAAGGCTCTTAACTGCTTCCGCGGAAAAGGTGAAGACTATCGAGGCACAACCAATACCACCTCTGCGGGCGTGCCCTGCCAGCGGTGGGATGCGCAGAGTCCACACCAGCACCGCTTTGTGCCAGAGAAATATGCTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591:ENSMUST00000035211:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.204
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(50.0=95.1)
A:
NA
C2:
PF0005113=Kringle=PU(53.2=63.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACACCACAGACCCGAATG
R:
TGCAAGCATATTTCTCTGGCACA
Band lengths:
249-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types