HsaINT1023639 @ hg38
Intron Retention
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr3:49686313-49686802:-
Coord C1 exon
chr3:49686684-49686802
Coord A exon
chr3:49686482-49686683
Coord C2 exon
chr3:49686313-49686481
Length
202 bp
Sequences
Splice sites
5' ss Seq
GCGGTAGGC
5' ss Score
7.2
3' ss Seq
CCTATCTCGGTCCATCTAAGGGT
3' ss Score
5.04
Exon sequences
Seq C1 exon
GTTCCTCGACCAAGGTCTGGACGACAACTATTGCCGGAATCCTGACGGCTCCGAGCGGCCATGGTGCTACACTACGGATCCGCAGATCGAGCGAGAGTTCTGTGACCTCCCCCGCTGCG
Seq A exon
GTAGGCGGCGGGGACCAGGCCTGGGAGGGTACCTGGGAACCTTGGGGAGGGGCGTGGCTTGGCCGGGGAGGTAAGAGGGGCTGGGCGTGACCTGAGAGCATACCCCGTGGAGTACCGTACACCTGGGAAAGGCGGGTTTGGTCCCAGCCCCAGAGGGATCTCAGCTCTCGCTCGGGGCCCGACCTATCTCGGTCCATCTAAG
Seq C2 exon
GGTCCGAGGCACAGCCCCGCCAAGAGGCCACAACTGTCAGCTGCTTCCGCGGGAAGGGTGAGGGCTACCGGGGCACAGCCAATACCACCACTGCGGGCGTACCTTGCCAGCGTTGGGACGCGCAAATCCCGCATCAGCACCGATTTACGCCAGAAAAATACGCGTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531:ENST00000449682:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.105
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(50.0=95.1)
A:
NA
C2:
PF0005113=Kringle=PU(53.2=73.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTCGACCAAGGTCTG
R:
TTGCACGCGTATTTTTCTGGC
Band lengths:
288-490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains