BtaINT0095649 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51082804-51083268:+
Coord C1 exon
chr22:51082804-51082929
Coord A exon
chr22:51082930-51083099
Coord C2 exon
chr22:51083100-51083268
Length
170 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGG
5' ss Score
3.17
3' ss Seq
CCGGCCTCGGTCCATCCAAGGGT
3' ss Score
2.99
Exon sequences
Seq C1 exon
GTTTCTGGACAAAAATCTGGACGACAACTATTGCCGGAATCCGGACGGCTCGGAGCGGCCCTGGTGCTATACCACCGACCCGCAGATGGAGAGAGAGTTCTGCGACCTCCCCCGCTGCGGTACAGC
Seq A exon
GTGAGGGCGGGGCCTGGGAGGGCACCTGGGATACGTGGGGGCGTGGCCTGGGGGCGAGAGGCAGGGCTGGGCGTGACCCGGCGAAGGGCCAGAGACCCTGGGGCTCCGCACCAGTCCGCGACCGGGTCTCAGCTCCGACTCCGGCTCCGACCGGCCTCGGTCCATCCAAG
Seq C2 exon
GGTCCGAGGCACAGCCGAGCCAGGAAGCCACGACGCTCAACTGCTTCCGCGGGAAAGGCGAGGGCTACCGGGGCACAGTCAACACCACCGCCGCAGGCGTGCCCTGCCAGCGTTGGGATGCACAGCTCCCACATCAGCATCGCTTTGCGCCGGAAAAGTATGCGTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585:ENSBTAT00000030663:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.674 A=NA C2=0.193
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(9.5=9.3)
A:
NA
C2:
PF0005113=Kringle=PU(53.2=73.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGACAACTATTGCCGGAA
R:
AAAGCGATGCTGATGTGGGAG
Band lengths:
254-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]