RnoINT0094907 @ rn6
Intron Retention
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116859445-116859908:+
Coord C1 exon
chr8:116859445-116859632
Coord A exon
chr8:116859633-116859712
Coord C2 exon
chr8:116859713-116859908
Length
80 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTA
5' ss Score
6.36
3' ss Seq
CAATTCCAATTTTTGGGCAGGGC
3' ss Score
4.25
Exon sequences
Seq C1 exon
GTTCCCAGACAAAGCTCTGAAAGACAACTATTGCCGTAATCCGGATGCATCTGAGCGGCCCTGGTGCTACACCACGGACCCGAATGTTGAGCGAGAGTTCTGTGACCTGCCCAGTTGCGGTATGCTGCAGGGACAGGGCCTCGGAGGGAACTTGGAAAAAACTGGCAGGCGTGGTTCAACTAGGAGAG
Seq A exon
GTACTAGGGAAGTTAGGCGTGGGCAGAGAGCAAAGCCTGCGGAATAGGAATACCAGAGACCAATTCCAATTTTTGGGCAG
Seq C2 exon
GGCCCAACCTGCCACCGACCACCAAAGGATCCAAGTCACAACAGCGCAACAAGGTCAAGGCTTCGAACTGCTTCCGCGGAAAAGGTGAAGACTATCGAGGCACAACCAATACCACCTCTGCGGGTGTGCCCTGCCAGCGCTGGGATGCGCAGAATCCGCACCAGCACCGCTTTGTGCCGGAGAAATATGCTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680:ENSRNOT00000026711:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.344 A=NA C2=0.470
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(50.0=60.9)
A:
NA
C2:
PF0005113=Kringle=PU(53.2=63.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCGAATGTTGAGCGAGAG
R:
CTTGACCTTGTTGCGCTGTTG
Band lengths:
171-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]