MmuALTD0009456-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000031311 | Nono
Description
non-POU-domain-containing, octamer binding protein [Source:MGI Symbol;Acc:MGI:1855692]
Coordinates
chrX:101444733-101446228:+
Coord C1 exon
chrX:101444733-101444790
Coord A exon
NA
Coord C2 exon
chrX:101446119-101446228
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTATAT
5' ss Score
5.01
3' ss Seq
ACCATACTACTCTACTTTAGGTG
3' ss Score
8.88
Exon sequences
Seq C1 exon
GCAAGAGGAAATGATGCGCCGACAGCAGGAAGGATTCAAGGGAACCTTCCCTGATGCG
Seq A exon
NA
Seq C2 exon
GTGCTATGGGCATAAACAATAGAGGCGCGATGCCCCCTGCTCCTGTGCCACCTGGTACTCCAGCTCCTCCAGGACCTGCCACTATGATGCCAGATGGAACCCTTGGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031311-31-33,32-33,33-33-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACAGCAGGAAGGATTCAA
R:
TCATAGTGGCAGGTCCTGGAG
Band lengths:
127-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types