RnoALTD0020239-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000003689 | Nono
Description
non-POU domain containing, octamer-binding [Source:RGD Symbol;Acc:1549738]
Coordinates
chrX:71338520-71339152:+
Coord C1 exon
chrX:71338520-71338554
Coord A exon
chrX:71338555-71338618
Coord C2 exon
chrX:71339113-71339152
Length
64 bp
Sequences
Splice sites
5' ss Seq
GCGGTATAT
5' ss Score
5.01
3' ss Seq
AAGTATATATTGTTTTTCAGAGA
3' ss Score
6.83
Exon sequences
Seq C1 exon
GAAGAGGAACGCAGGCGCCGTGAGGAAGAGATGCG
Seq A exon
GCGACAGCAAGAAGAAATGATGCGACGGCAGCAGGAAGGATTCAAGGGAACCTTCCCTGATGCG
Seq C2 exon
AGAGAACAAGAGATACGGATGGGCCAAATGGCTATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003689-18-19,19-19,20-19-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGGAACGCAGGCGC
R:
TGGCCCATCCGTATCTCTTGT
Band lengths:
61-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]