MmuALTD0010144-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000026784 | Pdss1
Description
prenyl (solanesyl) diphosphate synthase, subunit 1 [Source:MGI Symbol;Acc:MGI:1889278]
Coordinates
chr2:22770935-22785140:+
Coord C1 exon
chr2:22770935-22771044
Coord A exon
NA
Coord C2 exon
chr2:22785060-22785140
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTATGT
5' ss Score
5.57
3' ss Seq
GAATCTTCTTTTTCTTTCAGGTC
3' ss Score
11.32
Exon sequences
Seq C1 exon
GTGAATTTCTTCAGCTAGGGTCAAAAGAAAATGAGAATGAAAGGTTTGCCCACTACCTTGAGAAGACCTTCAAGAAGACAGCCAGCCTGATAGCCAACAGTTGTAAAGCA
Seq A exon
NA
Seq C2 exon
GTCTCTGTCCTGGGTTGCCCTGACCCAGTGGTGCATGAGATAGCCTATCAGTATGGGAAAAATGTTGGAATAGCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026784-13-11,14-11-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(13.7=100),PF073076=HEPPP_synt_1=FE(26.7=100)
A:
NA
C2:
PF0034812=polyprenyl_synt=FE(9.9=100),PF073076=HEPPP_synt_1=PD(3.0=14.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACTACCTTGAGAAGACC
R:
GCTATCTCATGCACCACTGGG
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: