BtaALTD0015941-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000006529 | PDSS1
Description
Bos taurus prenyl (decaprenyl) diphosphate synthase, subunit 1 (PDSS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001100331]
Coordinates
chr13:18191945-18200223:-
Coord C1 exon
chr13:18200114-18200223
Coord A exon
NA
Coord C2 exon
chr13:18191945-18192025
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTATGT
5' ss Score
5.57
3' ss Seq
CTCGGGATCCTCTGTTTCAGGTC
3' ss Score
9.44
Exon sequences
Seq C1 exon
GTGAATTTCTTCAGCTCGGGTCAAAAGAAAATGAAAATGAAAGATTTGCACACTACCTTGAGAAGACTTTCAAGAAGACTGCAAGTCTGATCGCCAACAGTTGTAAAGCA
Seq A exon
NA
Seq C2 exon
GTCTCTGTCCTGGGATGCCCTGACCCAGCGGTGCATGAGATTGCCTATCAGTATGGGAAGAACGTGGGCATCGCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006529-16-17,17-17-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(13.7=100)
A:
NA
C2:
PF0034812=polyprenyl_synt=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCAAGTCTGATCGCCAA
R:
GCCCACGTTCTTCCCATACTG
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development