RnoALTD0021773-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000048849 | Pdss1
Description
decaprenyl diphosphate synthase subunit 1 [Source:RGD Symbol;Acc:2319976]
Coordinates
chr17:90044324-90051789:-
Coord C1 exon
chr17:90051680-90051789
Coord A exon
NA
Coord C2 exon
chr17:90044324-90044404
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTATGT
5' ss Score
5.57
3' ss Seq
CAGAATCTTTTTTCCTTCAGGTC
3' ss Score
9.87
Exon sequences
Seq C1 exon
GTGAATTTCTTCAGCTAGGGTCAAAAGAAAATGAGAATGAAAGGTTTGCCCACTACCTTGAAAAGACCTTCAAGAAGACAGCCAGCCTGATAGCCAACAGTTGTAAAGCA
Seq A exon
NA
Seq C2 exon
GTCTCTGTCCTGGGTTGCCCTGACCCAGTGGTGCATGAGATTGCCTATCAGTATGGGAAAAACGTTGGAATAGCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048849-7-8,8-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(13.7=100),PF073076=HEPPP_synt_1=FE(26.7=100)
A:
NA
C2:
PF0034812=polyprenyl_synt=FE(11.6=100),PF073076=HEPPP_synt_1=PD(3.0=14.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCACTACCTTGAAAAGACC
R:
GCAATCTCATGCACCACTGGG
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]