MmuALTD0011653-2/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000031167 | Rbm3
Description
RNA binding motif protein 3 [Source:MGI Symbol;Acc:MGI:1099460]
Coordinates
chrX:8143848-8144445:-
Coord C1 exon
chrX:8144339-8144445
Coord A exon
chrX:8144288-8144338
Coord C2 exon
chrX:8143848-8143947
Length
51 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
TGTCTCCTTCCCATACCTAGTCC
3' ss Score
7.66
Exon sequences
Seq C1 exon
GGGGTGGAGGGCAGCGGCAGACAGAGCCGGGCTGCCTGGGAGGCGACGACTGGTCCTGCATGAGGCGGAGAAGCCACCTGTGGATGGTTGACCTGCTCTGGGCTTAG
Seq A exon
GTAGTAGAGTCTGCAGAGCTGTGGGCCTGGCAGAGGACCGGAGAGGACCTC
Seq C2 exon
TCCCTGGATGGGCGCCAAATCCGAGTTGATCATGCAGGAAAGTCTGCCAGGGGATCCAGAGGGGGTGCCTTTGGTGGGCGTGGTCGCAGTTACTCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031167-8-4,9-4,10-4,11-4-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(7.2=23.8)
A:
NA
C2:
PF0007617=RRM_1=PD(9.9=20.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGTGGATGGTTGACCTG
R:
TCTAGAGTAACTGCGACCACG
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types