RnoALTD0025231-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000005387 | Rbm3
Description
RNA binding motif protein 3 [Source:RGD Symbol;Acc:620145]
Coordinates
chrX:15100206-15100804:+
Coord C1 exon
chrX:15100206-15100312
Coord A exon
chrX:15100313-15100357
Coord C2 exon
chrX:15100699-15100804
Length
45 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
TGTCTCCTTCCCATACCTAGTCC
3' ss Score
7.66
Exon sequences
Seq C1 exon
GGGGTGGAGGGCAGCGGCAGACAGAGCCGGGCTGCCTGGGAGGCGACGACTGGTCCTGCATGAGGCCGAGAAGCCACCTGTGGATGGTTGACCTGCTCTGGGCTTAG
Seq A exon
GTAGTAGAGTCTGCAGACCTGTGGGCCTGGCCCGGAGAGGACCTC
Seq C2 exon
TCCCTGGATGGGCGCCAAATCCGTGTGGACCATGCAGGCAAGTCTGCCAGGGGAACCAGAGGGGGTGCCTTTGGGGCCCATGGGCGTGGTCGCAGCTACTCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005387-11-4,12-4,13-4-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.586
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(7.2=23.8)
A:
NA
C2:
PF0007617=RRM_1=PD(9.9=19.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGGTTGACCTGCTCTG
R:
TCTAGAGTAGCTGCGACCACG
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]