MmuALTD0012388-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000036529 | Sbf1
Description
SET binding factor 1 [Source:MGI Symbol;Acc:MGI:1925230]
Coordinates
chr15:89305344-89305657:-
Coord C1 exon
chr15:89305544-89305657
Coord A exon
chr15:89305540-89305543
Coord C2 exon
chr15:89305344-89305472
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGCTGTG
5' ss Score
-12.4
3' ss Seq
ACTTCCTGGTGTTCTCCCAGGCA
3' ss Score
8.41
Exon sequences
Seq C1 exon
GACAAGGAGCTCCGTGCTGTCTTTCTGCGGCTCTTTGCTCAGCTCCTGCAAGGCTACCGCTGGTGCCTGCACATCGTGCGCATCCACCCAGAGCCCGTCATCCGCTTCCATAAG
Seq A exon
GTAG
Seq C2 exon
GCAGCATTCTTAGGCCAGCGTGGACTGGTGGAGGATGATTTCCTGATGAAAGTATTGGAGGGCATGGCCTTCGCGGGCTTTGTATCTGAGCGTGGGGTTCCCTACCGTGCCACAGACCTGTTTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036529-21-22,22-22-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=FE(52.9=100)
A:
NA
C2:
PF0345514=dDENN=PD(42.9=69.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGCTCAGCTCCTGCAAG
R:
GTCCACGCTGGCCTAAGAATG
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types