MmuALTA0015840-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000036529 | Sbf1
Description
SET binding factor 1 [Source:MGI Symbol;Acc:MGI:1925230]
Coordinates
chr15:89305344-89305657:-
Coord C1 exon
chr15:89305544-89305657
Coord A exon
chr15:89305469-89305472
Coord C2 exon
chr15:89305344-89305468
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
ACTTCCTGGTGTTCTCCCAGGCA
3' ss Score
8.41
Exon sequences
Seq C1 exon
GACAAGGAGCTCCGTGCTGTCTTTCTGCGGCTCTTTGCTCAGCTCCTGCAAGGCTACCGCTGGTGCCTGCACATCGTGCGCATCCACCCAGAGCCCGTCATCCGCTTCCATAAG
Seq A exon
GCAG
Seq C2 exon
CATTCTTAGGCCAGCGTGGACTGGTGGAGGATGATTTCCTGATGAAAGTATTGGAGGGCATGGCCTTCGCGGGCTTTGTATCTGAGCGTGGGGTTCCCTACCGTGCCACAGACCTGTTTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036529-21-23,21-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=FE(52.9=100)
A:
NA
C2:
PF0345514=dDENN=PD(2.4=33.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTCATCCGCTTCCATAAG
R:
TCAGATACAAAGCCCGCGAAG
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types