BtaALTA0026058-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000021337 | SBF1
Description
SET binding factor 1 [Source:HGNC Symbol;Acc:HGNC:10542]
Coordinates
chr5:119982315-119982626:-
Coord C1 exon
chr5:119982513-119982626
Coord A exon
chr5:119982426-119982443
Coord C2 exon
chr5:119982315-119982425
Length
18 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GACTTCTCTGTGTACACCAGGCA
3' ss Score
6.12
Exon sequences
Seq C1 exon
GACAAGGAGCTGCGCGCCGTCTTCCTGCGGCTCTTTGCTCAGCTCCTGCAAGGCTACCGCTGGTGTCTGCACATGGTCCGCATCCACCCAGAGCCCGTCATCCGTTTCCATAAG
Seq A exon
GCAGCTTTCCTGGGCCAG
Seq C2 exon
CGCGGGCTGGTGGAGGATGATTTCCTGATGAAGGTGCTGGAGGGCATGGCCTTTGCAGGCTTCGTGTCCGAGCGCGGGGTCCCCTACCGCCCTACAGACCTGTTTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021337-13-20,13-19,13-18-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=FE(52.9=100)
A:
NA
C2:
PF0345514=dDENN=PD(42.9=69.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGCTCAGCTCCTGCAAG
R:
GAAATCATCCTCCACCAGCCC
Band lengths:
107-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development