RnoALTA0035034-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000008392 | Sbf1
Description
SET binding factor 1 [Source:RGD Symbol;Acc:1307090]
Coordinates
chr7:130278426-130278741:-
Coord C1 exon
chr7:130278628-130278741
Coord A exon
chr7:130278551-130278554
Coord C2 exon
chr7:130278426-130278550
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CTTCCTGGTGTTTTTCCCAGGCA
3' ss Score
9.48
Exon sequences
Seq C1 exon
GACAAGGAGCTCCGCGCTGTCTTTCTGCGGCTCTTTGCTCAGCTCCTGCAGGGTTACCGCTGGTGCCTGCACATCGTGCGCATCCACCCCGAGCCTGTCATTCGCTTCCATAAG
Seq A exon
GCAG
Seq C2 exon
CGTTCTTAGGCCAGCGTGGACTGGTGGAGGATGATTTCCTGATGAAAGTGTTGGAGGGCATGGCCTTTGCAGGCTTTGTGTCAGAGCGTGGGGTCCCCTACCGTTCTACAGACCTGTTTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008392-20-21,20-20-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=FE(52.9=100)
A:
NA
C2:
PF0345514=dDENN=PD(42.9=69.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTGTCATTCGCTTCCAT
R:
CTGACACAAAGCCTGCAAAGG
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]