MmuALTD0012579-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000019647 | Sema6a
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:MGI Symbol;Acc:MGI:1203727]
Coordinates
chr18:47466010-47492980:-
Coord C1 exon
chr18:47492928-47492980
Coord A exon
NA
Coord C2 exon
chr18:47466010-47466147
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
GCTCTTTTGCTCTTTGGCAGGGT
3' ss Score
7.64
Exon sequences
Seq C1 exon
TTCCCATGACTCTGGCTCCTCGGGACAATGTCTCTTTCTTCACCATGCTGATG
Seq A exon
NA
Seq C2 exon
GGTGAAGTAGAGAAGCAAGTCCCCCCGCTGAACCTACTATGCGGCCAGCAGCCTTACTGCTGTGTCTCACACTGCTACACTGCGCTGGGGCTGGTTTCCCAGAAGATTCCGAGCCAATCAGTATTTCGCATGGCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019647-1-3,2-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCATGACTCTGGCTCCTC
R:
TGGCTCGGAATCTTCTGGGAA
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: