MmuALTD0016135-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000033961 | Zfp446
Description
zinc finger protein 446 [Source:MGI Symbol;Acc:MGI:2442185]
Coordinates
chr7:12978012-12979378:+
Coord C1 exon
chr7:12978012-12978112
Coord A exon
chr7:12978113-12978218
Coord C2 exon
chr7:12978998-12979378
Length
106 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
ACATTCTTCCTTTTCTGTAGGTC
3' ss Score
11.22
Exon sequences
Seq C1 exon
GGCCTTGGAAGCGTGCTGTCGTTCTTGCTGAGGCTCACGGGAGACGTAGTCCGAGCGAAGGGGGCCGATCCGGCGGAGCAGATGCAGGATTGGCCGGGCTG
Seq A exon
GTAGGGCAACGCGCGAGGCGGGGCGTTCTCTGAGTGGCAGTGGGACGTGCTCGGTGTCACTTCCTGGAAGTGCCCCAACCTCCTGGGGCTCTCCCACGCGTCAGAG
Seq C2 exon
GTCCCTCTGTCACCTCCAAAAAGACCCTTCAAAACAAGAATGCCATCTCCTCGGGGTACCCCACACCTATCCCTCAGAGACTCCAGGACCACCCTTGAGGAGCCTGAGGCTGCACGACTCCGTTTCCGGGGTTTCTGCTATGAGGAGGTTGAGGGACCCCGAGAGGCACTGGCCCAGCTTCGAGAGTTGTGTCACCAGTGGCTACAGCCTGAGTCATCCTCCAAAGAACACATAATAGAGTTGCTGATTTTGGAACAGTTCCTGGGTGTGTTGCCCCCTGAGATCCAGGCCTGGGTTCGAGGGCAGCGACCAGGAAGCCCCGAGGAGGCCGCAGTTCTTGTTGAGGGGCTGCAGCATGATCCTGGGCAGCTGCTGGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033961-0-2,1-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.954 A=NA C2=0.322
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0202312=SCAN=WD(100=73.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCGTTCTTGCTGAGGCTC
R:
GGGTCCCTCAACCTCCTCATA
Band lengths:
245-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types