Special

MmuALTD0016135-2/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000033961 | Zfp446
Description
zinc finger protein 446 [Source:MGI Symbol;Acc:MGI:2442185]
Coordinates
chr7:13563361-13564727:+
Coord C1 exon
chr7:13563361-13563461
Coord A exon
chr7:13563462-13563567
Coord C2 exon
chr7:13564347-13564727
Length
106 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
ACATTCTTCCTTTTCTGTAGGTC
3' ss Score
11.22
Exon sequences
Seq C1 exon
GGCCTTGGAAGCGTGCTGTCGTTCTTGCTGAGGCTCACGGGAGACGTAGTCCGAGCGAAGGGGGCCGATCCGGCGGAGCAGATGCAGGATTGGCCGGGCTG
Seq A exon
GTAGGGCAACGCGCGAGGCGGGGCGTTCTCTGAGTGGCAGTGGGACGTGCTCGGTGTCACTTCCTGGAAGTGCCCCAACCTCCTGGGGCTCTCCCACGCGTCAGAG
Seq C2 exon
GTCCCTCTGTCACCTCCAAAAAGACCCTTCAAAACAAGAATGCCATCTCCTCGGGGTACCCCACACCTATCCCTCAGAGACTCCAGGACCACCCTTGAGGAGCCTGAGGCTGCACGACTCCGTTTCCGGGGTTTCTGCTATGAGGAGGTTGAGGGACCCCGAGAGGCACTGGCCCAGCTTCGAGAGTTGTGTCACCAGTGGCTACAGCCTGAGTCATCCTCCAAAGAACACATAATAGAGTTGCTGATTTTGGAACAGTTCCTGGGTGTGTTGCCCCCTGAGATCCAGGCCTGGGTTCGAGGGCAGCGACCAGGAAGCCCCGAGGAGGCCGCAGTTCTTGTTGAGGGGCTGCAGCATGATCCTGGGCAGCTGCTGGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033961-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption when splice site is used (sequence inclusion)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.954 A=NA C2=0.313
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0202312=SCAN=WD(100=73.2)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000039073





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr19:58987564-58987565 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr18:65906789-65906790 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr2:276734-276735 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CTGTCGTTCTTGCTGAGGCTC

				
R: 
GGGTCCCTCAACCTCCTCATA

				
Band lengths: 
245-351

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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