MmuINT0179264 @ mm9
Intron Retention
Gene
ENSMUSG00000033961 | Zfp446
Description
zinc finger protein 446 [Source:MGI Symbol;Acc:MGI:2442185]
Coordinates
chr7:13563197-13564727:+
Coord C1 exon
chr7:13563197-13563567
Coord A exon
chr7:13563568-13564346
Coord C2 exon
chr7:13564347-13564727
Length
779 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
ACATTCTTCCTTTTCTGTAGGTC
3' ss Score
11.22
Exon sequences
Seq C1 exon
GCACATGCGTAAGGAGGCTAACCCACAGTCGGCTCCGTCCTACGTGAGTCCTACGGCTGCGGTTGCAAGAGAAGAACGGCTGCCAAGTCAGGAGTGGGAACCCCCCCCGGAACTCTGCAGCAACGCGACCCCAAGGAGAGGAGCGAAGAGTCTCGCGCGTGAGAGGCCTTGGAAGCGTGCTGTCGTTCTTGCTGAGGCTCACGGGAGACGTAGTCCGAGCGAAGGGGGCCGATCCGGCGGAGCAGATGCAGGATTGGCCGGGCTGGTAGGGCAACGCGCGAGGCGGGGCGTTCTCTGAGTGGCAGTGGGACGTGCTCGGTGTCACTTCCTGGAAGTGCCCCAACCTCCTGGGGCTCTCCCACGCGTCAGAG
Seq A exon
GTGAGCTCACTCCTAGCTGGGCGGGCGCAGCTTCATAATCCGGCTCCTCGGATCACCGAGAGCACCTCCCAGCCGTCGGACCCACCCCTTTCCTGTGTCAGAGCCTGACACCCCAACTCTTGAGTTTCTCCAGAGCAGGACGGATGTCCCAAGAGAGCCGATTTAAAACCAGAATCTTAAGAGCTGGGACACAGGTTCCAGTTTACAACTCCACACAAAACGGGGCTGTTTGATTTTGGCTTTTGTTTCAGGGTTTCACATGCGTAGTAAGCTGAGGCAGTATGAGGCATCCACAATTCAGCTGCGATCAGCGAGCTGTGCCTCCCAACCCATAATAAGCTCCTGAGAATGCACCCAGGCTTTCAGCTCTGCCCCAGGTCTTGTACCTGTGTCTCAGAGCCAACTCTTCAGCTAGCACAGTGGTCTGCCTCCTGTCTGAAGCCTCAGGGCTCCAGGTCACCCAGGATGATGGTCCCACCCCCCTTCCCTCCGTGTCCTGCTTGACCCTTTGTCTACTGGATGAGCCACTTTCATCTCCCAGGAGCCCTGTGTTGTACCCAAATGTTTGAGCCCGTCATTTGCAGTTTTCTAGAAGGTCCCTGGACATTCCACCCAGTCATTTATCTTCAAAACAAAATACAGCTGCTCAACTGCTGTGGGGCTGCACCTCCCATGACCTTCTTTGAAGTTCTCCTGGCCTCAGGGTTCTCTTTTCCGGCTTCTAGGAGGGGTCTGGTGTGTGTCTTCTGACCTTAGATGACATTCTTCCTTTTCTGTAG
Seq C2 exon
GTCCCTCTGTCACCTCCAAAAAGACCCTTCAAAACAAGAATGCCATCTCCTCGGGGTACCCCACACCTATCCCTCAGAGACTCCAGGACCACCCTTGAGGAGCCTGAGGCTGCACGACTCCGTTTCCGGGGTTTCTGCTATGAGGAGGTTGAGGGACCCCGAGAGGCACTGGCCCAGCTTCGAGAGTTGTGTCACCAGTGGCTACAGCCTGAGTCATCCTCCAAAGAACACATAATAGAGTTGCTGATTTTGGAACAGTTCCTGGGTGTGTTGCCCCCTGAGATCCAGGCCTGGGTTCGAGGGCAGCGACCAGGAAGCCCCGAGGAGGCCGCAGTTCTTGTTGAGGGGCTGCAGCATGATCCTGGGCAGCTGCTGGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033961-Zfp446:NM_001168562:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.954 A=NA C2=0.313
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0202312=SCAN=WD(100=73.2)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGAACGGCTGCCAAGTC
R:
CCCGAGGAGATGGCATTCTTG
Band lengths:
358-1137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: