HsaINT0187284 @ hg19
Intron Retention
Gene
ENSG00000083838 | ZNF446
Description
zinc finger protein 446 [Source:HGNC Symbol;Acc:21036]
Coordinates
chr19:58987795-58988927:+
Coord C1 exon
chr19:58987795-58987871
Coord A exon
chr19:58987872-58988545
Coord C2 exon
chr19:58988546-58988927
Length
674 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CGACCCTTCCTTTTCTGTAGGCC
3' ss Score
10.34
Exon sequences
Seq C1 exon
TTTTGGGGACAGATCCCGAAGTTCGAGCATCCCTCGGATAGGCCGGGTGTCAGGCCTGGTCTCTCAGGCCCGTCCAG
Seq A exon
GTGGGCGTCTTTCACTGCAGACCTTCAGGGCCGGGATGCTGTGGCCATCCCTCGACTCCGCGCAACGTGGAGCTTTGGCCCCGTTTTTCTTGGCCTTTGCTTTTCGTTTTCACATGCACGGGCCCCGGCAGTGTGAGTCGCCCACGGCTCGCTGTGGTCAGCGAGCACGATGTCCACGTGCCCCCTCCCCAGAGCCATTCCTAAAGGAGGTCCCACCCAGTCAACCTCCCCGAGATTGTGGAGGGCGACTCGTCCCCGTACATTACAGCCTGGCCCCACCTTCTACCCGCCCACCCTGGTCCACTCTCCTCGCACCTCGGCTAGACACTGTGGCTCCTCAGCCTGGCGCTGGAACTCTGTGATGACTGTCTTTCTCCACCTCTTTAGCGTCATCTCCCAGCAGTCCCCTGCTGGACCCAACTGTTTGCAATTTCCAGGAAGCTCCCTGGACACCTTGCGTCCAAGCATTTGTCCCTGAGGCTTCCTCCTGCTCTCATTTGCCATCATTGTTTGGGTCCTGTGACCCTCCTCCTTCCATGAAGCTTTCTTGGCCTTATCTCTTCTGGCCTCAGAGTACACTTGGTCCTGGTCTCAGCCCCCTGGGCTGAGCCTGGTGTCTGCCTTCCCCTGGCCAGATTCTCTTGGCTGACATTCCGACCCTTCCTTTTCTGTAG
Seq C2 exon
GCCCATCTTGACGATTCCAAGACCACCCCCTTGAGCAAGAATGCCATCCCCTCTGGGTCCCCCATGCCTGCCCGTCATGGACCCAGAGACCACCCTTGAGGAGCCTGAGACTGCCCGCCTCCGCTTCCGAGGGTTCTGCTACCAGGAGGTGGCAGGTCCCCGAGAAGCCCTGGCCCGGCTGCGTGAGCTGTGTTGCCAGTGGCTGCAGCCTGAGGCACACTCCAAGGAGCAGATGCTGGAGATGCTGGTGCTGGAGCAGTTCCTGGGCACACTGCCTCCCGAGATCCAGGCCTGGGTGCGCGGTCAGCGGCCAGGCAGTCCTGAGGAGGCCGCTGCCCTAGTCGAAGGACTGCAGCATGACCCTGGGCAACTGTTGGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000083838-ZNF446:NM_017908:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.368
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=WD(100=82.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCCGAAGTTCGAGCATCC
R:
CTGGATCTCGGGAGGCAGTG
Band lengths:
355-1029
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)