BtaINT0165509 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038534 | ZNF446
Description
zinc finger protein 446 [Source:HGNC Symbol;Acc:HGNC:21036]
Coordinates
chr18:65907311-65907937:+
Coord C1 exon
chr18:65907311-65907350
Coord A exon
chr18:65907351-65907569
Coord C2 exon
chr18:65907570-65907937
Length
219 bp
Sequences
Splice sites
5' ss Seq
CAAGTGATT
5' ss Score
0.45
3' ss Seq
CTGACCCCTCTTTCCTGCAGGTG
3' ss Score
12.79
Exon sequences
Seq C1 exon
CATCATCTAGCTGTTCCCTGGAAGCTCCATCCGACTCCAA
Seq A exon
GTGATTCACAAGATTTCCTTCTGCTCTTAGTTCCAGCTCTCGTGACCTTTCCTTCCACTAAACTTTCCCCAGTTCAGCCTCGAGCGTCCCCACACTAGGGTCCTCTCTGTCCAGACATCAGCACCACCACCACCACCCCTGGGCTGGGGCTGTCTGCACGCAGCTGCCTCACCTTGGCTGTGGCCTTGTGGCTGACACTCTGACCCCTCTTTCCTGCAG
Seq C2 exon
GTGGCTCCAGGAAGATTCCCCGCACAATGCCATCCCCACTGGGTCCCCCAAATCTGCCTTCTCTGGACCCGGAGGCCATCCCAGAGAATCCTGAGACGGCACGCCAGCGCTTCCGGGGCTTCTGTTACCAGGAGGTGGCTGGTCCCCGGGTGGCTCTGGCCCGGCTGCAGTTTCTGTGCCACCAGTGGTTACAGCCCGAGGCGCACTCCAAGGAGCAGATACTAGACCTGCTGGTGCTGGAGCAGTTCCTGGGGGCGCTGCCCCCTGAGATTCAGGCCTGGGTGCGGGGCCAGCAGCCAGGCAGCCCTGAGGAGGCGGTTGTCCTGGTCGAAGACCTGCAGCGTGACCCTGGGCAGCTGCTGGGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038534:ENSBTAT00000056703:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.398
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0202312=SCAN=WD(100=76.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCTCCATCCGACTCCAA
R:
CACCCAGGCCTGAATCTCAG
Band lengths:
305-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development