MmuALTD1000144-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000000392 | Fap
Description
fibroblast activation protein [Source:MGI Symbol;Acc:MGI:109608]
Coordinates
chr2:62533131-62537034:-
Coord C1 exon
chr2:62536995-62537034
Coord A exon
chr2:62536990-62536994
Coord C2 exon
chr2:62533131-62533235
Length
5 bp
Sequences
Splice sites
5' ss Seq
GGAGTATGA
5' ss Score
0.37
3' ss Seq
CCTCTGTTCATTTCTTTCAGTTC
3' ss Score
10.45
Exon sequences
Seq C1 exon
AACCAGGAGCATGTAGAAGAAAGCAGAACAGGATGGGCTG
Seq A exon
GTGGA
Seq C2 exon
TTCTTTGTTTCGACACCAGCTTTTAGCCAGGATGCCACTTCTTACTACAAAATATTTAGCGACAAGGATGGTTACAAACATATTCACTACATCAAAGACACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000392-16-16,17-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(3.8=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(9.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCAGAACAGGATGGGCTG
R:
TGTTTGTAACCATCCTTGTCGCT
Band lengths:
101-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types