RnoALTD0011280-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000005679 | Fap
Description
fibroblast activation protein, alpha [Source:RGD Symbol;Acc:621253]
Coordinates
chr3:48499515-48503575:-
Coord C1 exon
chr3:48503536-48503575
Coord A exon
chr3:48503531-48503535
Coord C2 exon
chr3:48499515-48499619
Length
5 bp
Sequences
Splice sites
5' ss Seq
GGAGTATGA
5' ss Score
0.37
3' ss Seq
CCTCTGTTCATTTCTTTCAGTTC
3' ss Score
10.45
Exon sequences
Seq C1 exon
AACCAGGAGCATATTGAAGAAAGCAGAACAGGATGGGCTG
Seq A exon
GTGGA
Seq C2 exon
TTCTTTGTTTCCACACCAGCTTTTAGCCAGGATGCCGCTTCATACTACAAAATATTTAGCGACAAGGATGGTTACAAACATATTCACTACATCAAAGACACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005679-13-12,14-12,16-12-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(3.8=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(9.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCAGAACAGGATGGGCTG
R:
TGTTTGTAACCATCCTTGTCGCT
Band lengths:
101-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]