MmuALTD1011529-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000025409 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:MGI Symbol;Acc:MGI:106378]
Coordinates
chr10:127282415-127282903:-
Coord C1 exon
chr10:127282741-127282903
Coord A exon
chr10:127282737-127282740
Coord C2 exon
chr10:127282415-127282478
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGGGTGGGG
5' ss Score
0.79
3' ss Seq
CATTGCCTCCCTTCTTAAAGCTA
3' ss Score
7.62
Exon sequences
Seq C1 exon
CTGTCCCTTTGCCTCCCCGGGCCCGCCCTGGACGTCCTGCCAAAAATAAGAGGAGGAAACTGGCCCCATAGCAGCCATACCTGGAGCTGGAATCTGACCCTGACTGGGGAGAGCTGAGTGCTGAGCCTTGGGAGCCCCTGCCAGCCACGTGCACCTGTGGACA
Seq A exon
GTGG
Seq C2 exon
CTAGCAGGCTCAGTTTACAAACCTGTGAGCTACTGTTGGCTGCTGCCCTCCTTCCCAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025409-21-32,22-32,24-32-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACTGGGGAGAGCTGAGTG
R:
CAGCCAACAGTAGCTCACAGG
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types