MmuALTD1024800-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000038599 | Capn8
Description
calpain 8 [Source:MGI Symbol;Acc:MGI:2181366]
Coordinates
chr1:182628619-182630160:+
Coord C1 exon
chr1:182628619-182628641
Coord A exon
chr1:182628642-182628715
Coord C2 exon
chr1:182630102-182630160
Length
74 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGC
5' ss Score
5.59
3' ss Seq
ATGCTTCTCCGGTGTTTCAGAAT
3' ss Score
8.34
Exon sequences
Seq C1 exon
GTGCAGCAGACCATTGCCACGAG
Seq A exon
GTATGCATGCAGCAAGCTTGGTGTTGACTTTGACGGCTTTGTGGCTTGTATGATCCGCCTGGAGATCCTGTTCA
Seq C2 exon
AATTGTTCAGACTCTTGGATAAGGACCAGAATGGCATTGTACAGCTCTCCCTGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038599-31-30,32-30-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0229611=Alpha_adaptin_C=FE(41.5=100),PF134991=EF-hand_7=FE(43.3=100)
A:
NA
C2:
PF0229611=Alpha_adaptin_C=PD(8.5=40.0),PF134991=EF-hand_7=FE(21.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCAGACCATTGCCA
R:
AGCCAGGGAGAGCTGTACAAT
Band lengths:
79-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types