RnoALTD0005191-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000003468 | Capn8
Description
calpain 8 [Source:RGD Symbol;Acc:620085]
Coordinates
chr13:101039753-101040804:+
Coord C1 exon
chr13:101039753-101039795
Coord A exon
chr13:101039796-101039869
Coord C2 exon
chr13:101040746-101040804
Length
74 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGC
5' ss Score
5.59
3' ss Seq
TTGCTTCTCTGGCATTTCAGAAC
3' ss Score
7.82
Exon sequences
Seq C1 exon
GTTTCACCCTCAACAACCAGGTGCAGCAGACCATTGCCATGAG
Seq A exon
GTATGCGTGCAGTAAGCTTGGTGTTGACTTCAACGGTTTTGTGGCGTGTATGATCCGCCTGGAGACCCTGTTCA
Seq C2 exon
AACTGTTCAGGCTTTTGGATAAGGACCAGAATGGCATTGTCCAGCTCTCCCTGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003468-26-25,27-25-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0229611=Alpha_adaptin_C=FE(40.6=100),PF134991=EF-hand_7=FE(41.9=100)
A:
NA
C2:
PF0229611=Alpha_adaptin_C=PD(10.4=50.0),PF134991=EF-hand_7=FE(20.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCACCCTCAACAACCAGGT
R:
CAGGGAGAGCTGGACAATGC
Band lengths:
96-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]