MmuALTD1027707-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000042436 | Mfap4
Description
microfibrillar-associated protein 4 [Source:MGI Symbol;Acc:MGI:1342276]
Coordinates
chr11:61486910-61487261:+
Coord C1 exon
chr11:61486910-61486936
Coord A exon
chr11:61486937-61487006
Coord C2 exon
chr11:61487079-61487261
Length
70 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CGGCTGCCACCCGTCCCTAGGGC
3' ss Score
9.88
Exon sequences
Seq C1 exon
GTTTTCCAGAAAAGATTCAACGGCTCA
Seq A exon
GTGAGTTTCTTCCGGGGCTGGAGCGACTACAAGCTGGGCTTTGGCCGTGCTGACGGGGAGTACTGGCTGG
Seq C2 exon
GGCTGCAGAACCTGCACCTCCTGACACTGAAGCAGAAGTATGAGCTGCGCGTGGACTTGGAAGACTTTGAGAACAACACAGCCTATGCCAAGTACATTGACTTCTCCATCTCCCCCAACGCCATCAGTGCTGAGGAGGATGGCTATACCCTCTACGTGGCTGGCTTCGAGGATGGCGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042436-9-7,11-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(14.6=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(27.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAAAAGATTCAACGGCTCA
R:
GCCACGTAGAGGGTATAGCCA
Band lengths:
183-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types