MmuINT0098114 @ mm10
Intron Retention
Gene
ENSMUSG00000042436 | Mfap4
Description
microfibrillar-associated protein 4 [Source:MGI Symbol;Acc:MGI:1342276]
Coordinates
chr11:61486910-61487261:+
Coord C1 exon
chr11:61486910-61487006
Coord A exon
chr11:61487007-61487078
Coord C2 exon
chr11:61487079-61487261
Length
72 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CGGCTGCCACCCGTCCCTAGGGC
3' ss Score
9.88
Exon sequences
Seq C1 exon
GTTTTCCAGAAAAGATTCAACGGCTCAGTGAGTTTCTTCCGGGGCTGGAGCGACTACAAGCTGGGCTTTGGCCGTGCTGACGGGGAGTACTGGCTGG
Seq A exon
GTAAGGTGGGGCCATGGGGTGGGGGCTGCCCCTCAGCCAAGTCTCTGCTGACCGGCTGCCACCCGTCCCTAG
Seq C2 exon
GGCTGCAGAACCTGCACCTCCTGACACTGAAGCAGAAGTATGAGCTGCGCGTGGACTTGGAAGACTTTGAGAACAACACAGCCTATGCCAAGTACATTGACTTCTCCATCTCCCCCAACGCCATCAGTGCTGAGGAGGATGGCTATACCCTCTACGTGGCTGGCTTCGAGGATGGCGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042436:ENSMUST00000064783:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PD(43.0=28.8),PF0014713=Fibrinogen_C=PU(44.2=55.1)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(27.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGTGAGTTTCTTCCGGG
R:
ACTTGGCATAGGCTGTGTTGT
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types