HsaINT0102273 @ hg38
Intron Retention
Gene
ENSG00000166482 | MFAP4
Description
microfibrillar associated protein 4 [Source:HGNC Symbol;Acc:HGNC:7035]
Coordinates
chr17:19385099-19385454:-
Coord C1 exon
chr17:19385358-19385454
Coord A exon
chr17:19385282-19385357
Coord C2 exon
chr17:19385099-19385281
Length
76 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CAGCTGCCCCTCCTCCCCAGGGC
3' ss Score
8.78
Exon sequences
Seq C1 exon
GTTTTCCAGAAGAGATTCAATGGCTCAGTAAGTTTCTTCCGCGGCTGGAATGACTACAAGCTGGGCTTCGGCCGTGCTGATGGAGAGTACTGGCTGG
Seq A exon
GTAAGGCAGGGACCAGGTGGGCTGAGGGGCTGCCCCAGGGCCAGGTCCTTGTTGACCAGCTGCCCCTCCTCCCCAG
Seq C2 exon
GGCTGCAGAACATGCACCTCCTGACACTGAAGCAGAAGTATGAGCTGCGAGTGGACTTGGAGGACTTTGAGAACAACACGGCCTATGCCAAGTACGCTGACTTCTCCATCTCCCCGAACGCGGTCAGCGCAGAGGAGGATGGCTACACCCTCTTTGTGGCAGGCTTTGAGGATGGCGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166482:ENST00000299610:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(14.6=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(27.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAAGTTTCTTCCGCGGCTG
R:
GGAGAAGTCAGCGTACTTGGC
Band lengths:
178-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development