BtaINT0092106 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006187 | MFAP4
Description
Bos taurus microfibrillar-associated protein 4 (MFAP4), mRNA. [Source:RefSeq mRNA;Acc:NM_001080217]
Coordinates
chr19:34686462-34686818:+
Coord C1 exon
chr19:34686462-34686558
Coord A exon
chr19:34686559-34686635
Coord C2 exon
chr19:34686636-34686818
Length
77 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
AATTGCACCCCCCTTCTCAGGGC
3' ss Score
7.05
Exon sequences
Seq C1 exon
GTTTTCCAGAAGAGATTCAACGGCTCGGTGAGCTTCTTCCGGGGCTGGAACGACTACAAGCTGGGCTTTGGCCGGGCTGACGGGGAGTACTGGCTGG
Seq A exon
GTAAGACAGGGCCCGGTGGGCTGGGGGGCCCTGGAGCCAGGTCCCCACTGACCAGCCAATTGCACCCCCCTTCTCAG
Seq C2 exon
GGCTCCAGAACATGCACCTGCTGACACTGAAGCAGAAGTACGAGCTGCGGGTGGACCTGGAGGACTTTGAGAACAACACGGCCTTTGCCAAGTACGCTGACTTCTCTATCTCACCCAATGCTGTCAGCGCAGAGGAGGATGGCTACACCCTCTATGTGTCGGGCTTTGAGGATGGCGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006187:ENSBTAT00000008130:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(14.6=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(27.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAACGACTACAAGCTGG
R:
GCTGACAGCATTGGGTGAGAT
Band lengths:
182-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development