MmuALTD1035759-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137461806-137465291:-
Coord C1 exon
chr5:137463327-137465291
Coord A exon
NA
Coord C2 exon
chr5:137461806-137461990
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
AAGCTGTGTTTTCCTTTCAGAGA
3' ss Score
8.89
Exon sequences
Seq C1 exon
AGAAGTGACCACTGTTCCTCCTGTCAGCATCCCTTCTGAGGAGACCACCATTCCTACAGAAGTAACCACTGTCCCTCCTGAAGAGACCACCATCCCTGCAGAAGTGACCACTACCCCTCCTGAAGAGACCACCATCCCTACAGAAGTGACCACTGTTCCTCCTGCCAGCATCCCTCCTGAGGAGACCGCCTCCCTGACAGAAGTGACCACTACCCCTCCTGAGGAGACCACCACCCCAACAGAAGTGACCACTGTCCCTCCTGAAAAGACCACCATCCCTACAGAAGTGACCACTGTTCCTCCTGCCAGCATCTTTCCTGAGGAAACCACTGTCCCTCCTGAAGAGACCACCATTGCTTCTGAAGAGACCACTGTCTCCACTCAAGAGACCACTCTCCTTACAGAGCAATCTGCTGTCACTCAAACATCCATAGCATGCAGACCACCCTGTCCAAGTCCTCCACTAATGCCCATCGGACCACTCCTTTCAAAGCCTCCAG
Seq A exon
NA
Seq C2 exon
AGAGCTGCCCTCCAAATGCCCACATTGAATTGTGTGCATGCCCAGCATCCTGTGAGAGCCCCAAGCCCAGCTGCCAGCCCCCCTGCATTCCTGGCTGTGTCTGTAACCCTGGGTTTTTGTTTAGTAATAATCAATGTATCAATGAGTCTTCCTGCAATTGTCCCTACAACAACAAGTACTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173-16-15,17-15-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.943 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(0.1=0.0)
A:
NA
C2:
PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(17.9=16.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTAATGCCCATCGGACCAC
R:
CAGACACAGCCAGGAATGCAG
Band lengths:
142-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types