MmuALTD1035759-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137461806-137465291:-
Coord C1 exon
chr5:137463327-137465291
Coord A exon
chr5:137463279-137463326
Coord C2 exon
chr5:137461806-137461990
Length
48 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
AAGCTGTGTTTTCCTTTCAGAGA
3' ss Score
8.89
Exon sequences
Seq C1 exon
AGAAGTGACCACTGTTCCTCCTGTCAGCATCCCTTCTGAGGAGACCACCATTCCTACAGAAGTAACCACTGTCCCTCCTGAAGAGACCACCATCCCTGCAGAAGTGACCACTACCCCTCCTGAAGAGACCACCATCCCTACAGAAGTGACCACTGTTCCTCCTGCCAGCATCCCTCCTGAGGAGACCGCCTCCCTGACAGAAGTGACCACTACCCCTCCTGAGGAGACCACCACCCCAACAGAAGTGACCACTGTCCCTCCTGAAAAGACCACCATCCCTACAGAAGTGACCACTGTTCCTCCTGCCAGCATCTTTCCTGAGGAAACCACTGTCCCTCCTGAAGAGACCACCATTGCTTCTGAAGAGACCACTGTCTCCACTCAAGAGACCACTCTCCTTACAGAGCAATCTGCTGTCACTCAAACATCCATAGCATGCAGACCACCCTGTCCAAGTCCTCCACTAATGCCCATCGGACCACTCCTTTCAAAGCCTCCAG
Seq A exon
GTGTGTCAATGTTCAGCCTGGCCCCGACTACAGGTGTTTCTACCACAG
Seq C2 exon
AGAGCTGCCCTCCAAATGCCCACATTGAATTGTGTGCATGCCCAGCATCCTGTGAGAGCCCCAAGCCCAGCTGCCAGCCCCCCTGCATTCCTGGCTGTGTCTGTAACCCTGGGTTTTTGTTTAGTAATAATCAATGTATCAATGAGTCTTCCTGCAATTGTCCCTACAACAACAAGTACTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173-16-15,17-15-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.943 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(0.1=0.0)
A:
NA
C2:
PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(17.9=16.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTAATGCCCATCGGACCAC
R:
CAGACACAGCCAGGAATGCAG
Band lengths:
142-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types