MmuEX0052611 @ mm10
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137458509-137465291:-
Coord C1 exon
chr5:137463279-137465291
Coord A exon
chr5:137461806-137461990
Coord C2 exon
chr5:137458509-137458650
Length
185 bp
Sequences
Splice sites
3' ss Seq
AAGCTGTGTTTTCCTTTCAGAGA
3' ss Score
8.89
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
CATTCCTACAGAAGTAACCACTGTCCCTCCTGAAGAGACCACCATCCCTGCAGAAGTGACCACTACCCCTCCTGAAGAGACCACCATCCCTACAGAAGTGACCACTGTTCCTCCTGCCAGCATCCCTCCTGAGGAGACCGCCTCCCTGACAGAAGTGACCACTACCCCTCCTGAGGAGACCACCACCCCAACAGAAGTGACCACTGTCCCTCCTGAAAAGACCACCATCCCTACAGAAGTGACCACTGTTCCTCCTGCCAGCATCTTTCCTGAGGAAACCACTGTCCCTCCTGAAGAGACCACCATTGCTTCTGAAGAGACCACTGTCTCCACTCAAGAGACCACTCTCCTTACAGAGCAATCTGCTGTCACTCAAACATCCATAGCATGCAGACCACCCTGTCCAAGTCCTCCACTAATGCCCATCGGACCACTCCTTTCAAAGCCTCCAGGTGTGTCAATGTTCAGCCTGGCCCCGACTACAGGTGTTTCTACCACAG
Seq A exon
AGAGCTGCCCTCCAAATGCCCACATTGAATTGTGTGCATGCCCAGCATCCTGTGAGAGCCCCAAGCCCAGCTGCCAGCCCCCCTGCATTCCTGGCTGTGTCTGTAACCCTGGGTTTTTGTTTAGTAATAATCAATGTATCAATGAGTCTTCCTGCAATTGTCCCTACAACAACAAGTACTATAAG
Seq C2 exon
CCTGGGGAAGAATGGTTCACTCCCAATTGCACAGAGCGGTGCCGCTGCTTGCCGGGTAGCCTGATGGAGTGCCAGATCTCTCAGTGTGGGACGCATACGGTATGCCAGCTGAAGAGTGACCAGTACCAGTGTGAGCCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173_CASSETTE8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.943 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(0.1=0.0)
A:
PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(17.9=16.1)
C2:
PF127142=TILa=PD(78.6=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCTGAAGAGACCACCAT
R:
GCTCTGTGCAATTGGGAGTGA
Band lengths:
252-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types