BtaEX6110563 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003432 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr25:36388218-36392296:-
Coord C1 exon
chr25:36391658-36392296
Coord A exon
chr25:36390741-36390925
Coord C2 exon
chr25:36388218-36388359
Length
185 bp
Sequences
Splice sites
3' ss Seq
GGAGGCTGGTTTCCCCTCAGCCA
3' ss Score
3.17
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CCCCACAGAAAAGACCACCATTCCCACAGAAAAAACAACCATCCCCACGGAAAAAGTCACTGTCCCCACAGAAAAGACTACCATTCCCACTGAAAAAACAACCATCTCCACAGAAAAAGCCACTGTCCCCACTGAAAAGACCACCATTCCCACTGAAAAAACAACCATCTCCACAGAAAAAGCCACTGTTCCCACTGAAAAGACCACCATTCCCACAGAAAAAGCCACTGTCCCCACCAAAACGACCACCATTCCCACTGAAGAAACAACCATCTCCACAGAAAAAACCACTGTCCCCACCAAAAAGACCACCATTCCCACTAAAAAGACCACCATCCCCACAGAAAAGCCCACTGTCCCCACTGAAAGGCCCACACCTCCCATGACACCCCAGCCCAGCCCAGCTCTTGTACCCACTCAGCCGACAGTCTTCACGAAGCCAACTACCTCCGTGACCCCTGTGACCCCAGCCACCACTACAACCCCGAGACCTACTCCCG
Seq A exon
CCACGTGCCCTCCGAATGCCCACTATGAACGCTGTGCCTGCCCAGAGTCCTGCCAGAGCCCCAAGCCCACCTGTGGTCTCCTTTGCAAGCCTGGCTGTGTCTGCAACTCAGGCTTTCTGTTCCATGACTCCCGCTGCATCAATGCCTCTTCCTGTAATTGCTTCTACAATGAAAATTACTACAAG
Seq C2 exon
TCAGGGACAGAGTGGTTCAGCCCCAACTGCACAGAACGTTGCCGCTGCCAGCCTGGCAGTCAGATAGAGTGCCAGCCCTATAAGTGCGGGACAAACACAGTGTGCCAACTGAAGCATGGCCAGTACAGATGCCACCCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003432-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(16.4=14.5)
C2:
PF127142=TILa=PD(80.0=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCACCATCCCCACAGAAA
R:
GCTGGCACTCTATCTGACTGC
Band lengths:
250-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]