MmuEX0052611 @ mm9
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137899737-137906519:-
Coord C1 exon
chr5:137904507-137906519
Coord A exon
chr5:137903034-137903218
Coord C2 exon
chr5:137899737-137899878
Length
185 bp
Sequences
Splice sites
3' ss Seq
AAGCTGTGTTTTCCTTTCAGAGA
3' ss Score
8.89
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
CATTCCTACAGAAGTAACCACTGTCCCTCCTGAAGAGACCACCATCCCTGCAGAAGTGACCACTACCCCTCCTGAAGAGACCACCATCCCTACAGAAGTGACCACTGTTCCTCCTGCCAGCATCCCTCCTGAGGAGACCGCCTCCCTGACAGAAGTGACCACTACCCCTCCTGAGGAGACCACCACCCCAACAGAAGTGACCACTGTCCCTCCTGAAAAGACCACCATCCCTACAGAAGTGACCACTGTTCCTCCTGCCAGCATCTTTCCTGAGGAAACCACTGTCCCTCCTGAAGAGACCACCATTGCTTCTGAAGAGACCACTGTCTCCACTCAAGAGACCACTCTCCTTACAGAGCAATCTGCTGTCACTCAAACATCCATAGCATGCAGACCACCCTGTCCAAGTCCTCCACTAATGCCCATCGGACCACTCCTTTCAAAGCCTCCAGGTGTGTCAATGTTCAGCCTGGCCCCGACTACAGGTGTTTCTACCACAG
Seq A exon
AGAGCTGCCCTCCAAATGCCCACATTGAATTGTGTGCATGCCCAGCATCCTGTGAGAGCCCCAAGCCCAGCTGCCAGCCCCCCTGCATTCCTGGCTGTGTCTGTAACCCTGGGTTTTTGTTTAGTAATAATCAATGTATCAATGAGTCTTCCTGCAATTGTCCCTACAACAACAAGTACTATAAG
Seq C2 exon
CCTGGGGAAGAATGGTTCACTCCCAATTGCACAGAGCGGTGCCGCTGCTTGCCGGGTAGCCTGATGGAGTGCCAGATCTCTCAGTGTGGGACGCATACGGTATGCCAGCTGAAGAGTGACCAGTACCAGTGTGAGCCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173-'17-19,'17-18,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.937 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(0.1=0.0)
A:
PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(17.9=16.1)
C2:
PF127142=TILa=PD(78.6=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCTGAAGAGACCACCAT
R:
GCTCTGTGCAATTGGGAGTGA
Band lengths:
252-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: