HsaEX7004303 @ hg38
Exon Skipping
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100751712-100758343:+
Coord C1 exon
chr7:100751712-100753229
Coord A exon
chr7:100755226-100755410
Coord C2 exon
chr7:100758202-100758343
Length
185 bp
Sequences
Splice sites
3' ss Seq
AGAGGCTGTTTTCCCCTTAGAGC
3' ss Score
7.84
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GGAAAAACTCACCATCCCCACGGAAAAACCCACCATCCCCATTGAAGAGACTACCATCTCCACAGAAAAACTCACCATCCCCACAGAAAAACCCACCATCTCCCCAGAAAAACCCACCATCTCCACGGAAAAACCCACCATCCCCACGGAAAAACCCACCATCCCCACTGAAGAGACTACCATCTCCACAGAAAAACTCACCATCCCCACAGAAAAACCCACCATCTCCCCAGAAAAACTCACCATCCCCACAGAAAAACCCACCATCTCCACGGAAAAACCCACCATCCCCACGGAAAAACTTACCATCCCCACGGAAAAACCCACCATCCCCACAGAAAAACCCACCATTCCCACAGAGAAGCTCACAGCCCTGAGGCCACCCCATCCCAGCCCCACAGCCACTGGGCTGGCAGCCTTGGTGATGTCTCCACATGCTCCAAGTACCCCTATGACCAGTGTGATTCTGGGCACTACCACAACCTCCAGATCCAGTACAG
Seq A exon
AGCGCTGCCCTCCAAATGCCCGCTACGAATCCTGTGCTTGTCCTGCTTCGTGCAAGAGCCCCAGGCCTAGCTGTGGGCCCCTCTGTCGGGAGGGCTGTGTCTGCAACCCTGGCTTTTTGTTTAGTGACAACCACTGCATCCAGGCCTCTTCCTGCAATTGCTTCTACAACAACGACTACTATGAG
Seq C2 exon
CCTGGGGCAGAGTGGTTCAGCCCCAACTGCACAGAACATTGCCGCTGCTGGCCCGGCAGTCGGGTCGAGTGCCAGATCTCTCAGTGTGGGACACACACCGTGTGCCAGCTTAAGAATGGCCAGTATGGATGCCACCCCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.984 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(0.1=0.0)
A:
PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(16.4=14.5)
C2:
PF127142=TILa=PD(80.0=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCATTCCCACAGAGAAGC
R:
TCCCACACTGAGAGATCTGGC
Band lengths:
247-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains