MmuALTD1040903-3/6 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000033707 | Lrrc24
Description
leucine rich repeat containing 24 [Source:MGI Symbol;Acc:MGI:3605040]
Coordinates
chr15:76723171-76723896:-
Coord C1 exon
chr15:76723796-76723896
Coord A exon
chr15:76723655-76723795
Coord C2 exon
chr15:76723171-76723219
Length
141 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
CCACTGTGTCCCTTCTGCAGCTT
3' ss Score
10.06
Exon sequences
Seq C1 exon
CCGCCCCTCCGAGCACGTGTTGCCGGCGGAACCCAAAGCCCCAGGCACAACACTGTGTGATCCGCTTCCGGTGTGGAAGAATGTGGCCGCCTAGTGGGGCA
Seq A exon
GTGCGTAACTTGGCTCTAGTCTTGGCGAGGTCGCAGAGAGCTCGGACCTGCAGTGGGGTCGAGCGTGTCTCCTACACACAGGGTCAAAGCCCGGAGCCCAGAACCCGCGAGTATTTCTACTATGTGGATCACCAAGGCCAG
Seq C2 exon
CTTTTCCTAGATGACTCCAAAATGAAGAACTTTATCACCTGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033707-0-2,1-2,2-2,3-2,4-2,5-2-3/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF149561=DUF4505=PU(13.7=46.3)
A:
NA
C2:
PF149561=DUF4505=FE(8.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCGAGCACGTGTTG
R:
CTTTGAAGCAGGTGATAAAGTTCT
Band lengths:
146-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types