MmuALTD1040903-5/6 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000033707 | Lrrc24
Description
leucine rich repeat containing 24 [Source:MGI Symbol;Acc:MGI:3605040]
Coordinates
chr15:76723171-76723896:-
Coord C1 exon
chr15:76723796-76723896
Coord A exon
chr15:76723593-76723795
Coord C2 exon
chr15:76723171-76723219
Length
203 bp
Sequences
Splice sites
5' ss Seq
CGGGTGGGG
5' ss Score
3.69
3' ss Seq
CCACTGTGTCCCTTCTGCAGCTT
3' ss Score
10.06
Exon sequences
Seq C1 exon
CCGCCCCTCCGAGCACGTGTTGCCGGCGGAACCCAAAGCCCCAGGCACAACACTGTGTGATCCGCTTCCGGTGTGGAAGAATGTGGCCGCCTAGTGGGGCA
Seq A exon
GTGCGTAACTTGGCTCTAGTCTTGGCGAGGTCGCAGAGAGCTCGGACCTGCAGTGGGGTCGAGCGTGTCTCCTACACACAGGGTCAAAGCCCGGAGCCCAGAACCCGCGAGTATTTCTACTATGTGGATCACCAAGGCCAGGTGTGCCTGGCGTGTGACAGAGGGAGGAGACCTGAGGGGACTGCGGAATCCATCGGCACCGG
Seq C2 exon
CTTTTCCTAGATGACTCCAAAATGAAGAACTTTATCACCTGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033707-0-2,1-2,2-2,3-2,4-2,5-2-5/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF149561=DUF4505=PU(13.7=46.3)
A:
NA
C2:
PF149561=DUF4505=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCGAGCACGTGTTG
R:
TGAAGCAGGTGATAAAGTTCTTCA
Band lengths:
143-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types