MmuEX0008450 @ mm10
Exon Skipping
Gene
ENSMUSG00000033707 | Lrrc24
Description
leucine rich repeat containing 24 [Source:MGI Symbol;Acc:MGI:3605040]
Coordinates
chr15:76721466-76723845:-
Coord C1 exon
chr15:76723655-76723845
Coord A exon
chr15:76723171-76723219
Coord C2 exon
chr15:76721466-76722983
Length
49 bp
Sequences
Splice sites
3' ss Seq
CCACTGTGTCCCTTCTGCAGCTT
3' ss Score
10.06
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
ACTGTGTGATCCGCTTCCGGTGTGGAAGAATGTGGCCGCCTAGTGGGGCAGTGCGTAACTTGGCTCTAGTCTTGGCGAGGTCGCAGAGAGCTCGGACCTGCAGTGGGGTCGAGCGTGTCTCCTACACACAGGGTCAAAGCCCGGAGCCCAGAACCCGCGAGTATTTCTACTATGTGGATCACCAAGGCCAG
Seq A exon
CTTTTCCTAGATGACTCCAAAATGAAGAACTTTATCACCTGCTTCAAAG
Seq C2 exon
ACCTGCAGTTCCTGGTCACTTTCTTCTCCCGTCTGAGACCCAACCACAGCGGGCGCTACGAGGCTTCCTTCCCCTTCCTCTCGCTTTGCGGCAGAGAGCGTAACTTCCTGCGCTGTGAAGACCGGCCAGTGGTCTTCACGCACCTCCTGGCTTCCGACAGCGAGTCACCTCGTCTCTCCTACTGTGGCGGTGGCGAGGCGCTGGCGATACCCTTCGAGCCGGCTCGCTTGCTACCCCTGGCGGCCAATGGGCGCCTGTACCACCCGGCCCCGGAGCGCGCAGGCGGTGTGGGTCTAGTGCGCTCGGCCCTGGCCTTCGAGCTCAGCGCTTGCTTCGAGTATGGGCCTAGCTCCCCTACGGTCCCCTCTCACGTACACTGGCAAGGTCGCCGCATCGCCCTAACTATGGATCTGGCCCCGCTGCTGCCCGCTGCCCCGCCGCCCTGAGACTCCAGCTGGGGCTGTGTGGGGAGGGTTAGAGCAAACTCTGGGTTTTGTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033707-'2-4,'2-2,7-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149561=DUF4505=PU(13.7=46.3)
A:
PF149561=DUF4505=FE(8.7=100)
C2:
PF149561=DUF4505=PD(76.5=94.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACACACAGGGTCAAAGCC
R:
GAAGGGGAAGGAAGCCTCGTA
Band lengths:
148-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types