MmuEX0008450 @ mm9
Exon Skipping
Gene
ENSMUSG00000079002 | C030006K11Rik
Description
RIKEN cDNA C030006K11 gene [Source:MGI Symbol;Acc:MGI:1925941]
Coordinates
chr15:76551896-76554275:-
Coord C1 exon
chr15:76554085-76554275
Coord A exon
chr15:76553601-76553649
Coord C2 exon
chr15:76551896-76553413
Length
49 bp
Sequences
Splice sites
3' ss Seq
CCACTGTGTCCCTTCTGCAGCTT
3' ss Score
10.06
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
ACTGTGTGATCCGCTTCCGGTGTGGAAGAATGTGGCCGCCTAGTGGGGCAGTGCGTAACTTGGCTCTAGTCTTGGCGAGGTCGCAGAGAGCTCGGACCTGCAGTGGGGTCGAGCGTGTCTCCTACACACAGGGTCAAAGCCCGGAGCCCAGAACCCGCGAGTATTTCTACTATGTGGATCACCAAGGCCAG
Seq A exon
CTTTTCCTAGATGACTCCAAAATGAAGAACTTTATCACCTGCTTCAAAG
Seq C2 exon
ACCTGCAGTTCCTGGTCACTTTCTTCTCCCGTCTGAGACCCAACCACAGCGGGCGCTACGAGGCTTCCTTCCCCTTCCTCTCGCTTTGCGGCAGAGAGCGTAACTTCCTGCGCTGTGAAGACCGGCCAGTGGTCTTCACGCACCTCCTGGCTTCCGACAGCGAGTCACCTCGTCTCTCCTACTGTGGCGGTGGCGAGGCGCTGGCGATACCCTTCGAGCCGGCTCGCTTGCTACCCCTGGCGGCCAATGGGCGCCTGTACCACCCGGCCCCGGAGCGCGCAGGCGGTGTGGGTCTAGTGCGCTCGGCCCTGGCCTTCGAGCTCAGCGCTTGCTTCGAGTATGGGCCTAGCTCCCCTACGGTCCCCTCTCACGTACACTGGCAAGGTCGCCGCATCGCCCTAACTATGGATCTGGCCCCGCTGCTGCCCGCTGCCCCGCCGCCCTGAGACTCCAGCTGGGGCTGTGTGGGGAGGGTTAGAGCAAACTCTGGGTTTTGTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079002-'0-1,'0-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149561=DUF4505=PU(13.7=46.3)
A:
PF149561=DUF4505=FE(8.7=100)
C2:
PF149561=DUF4505=PD(76.5=94.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACACACAGGGTCAAAGCC
R:
GAAGGGGAAGGAAGCCTCGTA
Band lengths:
148-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types