HsaEX6083049 @ hg19
Exon Skipping
Gene
ENSG00000213563 | C8orf82
Description
chromosome 8 open reading frame 82 [Source:HGNC Symbol;Acc:33826]
Coordinates
chr8:145751604-145754458:-
Coord C1 exon
chr8:145754145-145754458
Coord A exon
chr8:145753408-145753456
Coord C2 exon
chr8:145751604-145753171
Length
49 bp
Sequences
Splice sites
3' ss Seq
GCCTGGCCCTCTATCTGCAGCTT
3' ss Score
9.43
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GAGCCCCCGAGGCCCGAGGGAGAGGGAAGAGCGCCGGGCCCGGGTCGCGGAGGCGGGCGCCGCCGGAACGCGAAGCGCGGGGCTACTGCGGGCAGGCGCGAGTTCGCGCAGCACCGCCCCCGGCGTGACCTGCTGGTCGCTTCCGGCGCGGGAGGAGAATGTGGCCGCCTTGCGGGACGCTCCGGACCCTGGCCTTGGCGCGGTCGCGGGGAGCCCGGGCCTGCAGCGGGGATGGGGGCGTTTCCTACACGCAGGGCCAGAGTCCGGAGCCGCGGACCCGCGAGTATTTCTACTACGTGGACCACCAGGGCCAG
Seq A exon
CTTTTCCTGGATGATTCCAAAATGAAGAATTTCATCACCTGCTTCAAAG
Seq C2 exon
ACCCGCAGTTCCTGGTCACCTTCTTCTCCCGCCTGAGACCCAACCGCAGCGGGCGCTACGAGGCCGCTTTCCCCTTCCTCTCGCCCTGCGGCAGAGAGCGCAACTTCCTGCGCTGCGAGGACCGGCCGGTGGTCTTCACGCACCTGCTGACCGCGGACCACGGGCCTCCGCGCCTCTCCTACTGCGGCGGTGGCGAGGCCCTGGCCGTGCCCTTCGAGCCGGCGCGCCTGCTGCCCCTGGCCGCCAACGGGCGCCTGTACCACCCGGCGCCGGAGCGTGCGGGCGGCGTGGGCCTGGTGCGCTCCGCCCTGGCCTTCGAGCTCAGCGCCTGCTTCGAGTACGGGCCCGGCGCGCCTGCGCTGCCCTCGCACGTGCGCTGGCAGGGCCGCCGCCTCGCCCTCACCATGGACCTGGCCCCGCTGCTGCTCGCGGCTCGGTCGCCCTGAGCGGGGCCAAGGGAAAGGCGGGAGGCCGCGGGCGCCTCTCGCCCCGCTCCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213563-'0-4,'0-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.202 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149561=DUF4505=PU(54.3=48.1)
A:
PF149561=DUF4505=FE(8.7=100)
C2:
PF149561=DUF4505=PD(76.5=94.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACCCGCGAGTATTTCTAC
R:
AAGTTGCGCTCTCTGCCG
Band lengths:
148-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)