RnoEX0051701 @ rn6
Exon Skipping
Gene
ENSRNOG00000045765 | MGC94207
Description
similar to RIKEN cDNA C030006K11 [Source:RGD Symbol;Acc:1359663]
Coordinates
chr7:117786207-117788550:-
Coord C1 exon
chr7:117788386-117788550
Coord A exon
chr7:117787906-117787954
Coord C2 exon
chr7:117786207-117787734
Length
49 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCCTTCTGTCTGCAGCTT
3' ss Score
11.53
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
AGGATGTGGCCGCCTTGCGGGGCAATGCGTAACTTGGCTCTAGTCTTGGCGAGGTCGCAGAGAGCTCGGGCCTGCAGTGGGAACGAACGTGTCTCCTACACACAGGGCCAAAGTCCGGAGCCCAGAACCCGCGAGTATTTCTACTATGTGGATCACCAAGGCCAG
Seq A exon
CTTTTCCTAGATGACTCCAAAATGAAGAACTTTATCACCTGCTTCAAAG
Seq C2 exon
ACCTGCAATTCCTGGTCACTTTCTTCTCCCGTCTGAGACCCAACCACAGCGGGCGCTACGAGGCTTCCTTCCCTTTCCTCTCGCTTTGTGGCAGAGAGCGTAACTTCCTGCGCTGTGAAGACCGGCCAGTGGTCTTCACGCACCTCCTGGCTTCCGACAGCGAGTCACCTCGTCTCTCCTACTGCGGCGGCGGCGAGGCACTGGCCATACCCTTCGAGCCCGCTCGCTTGCTACCCCTGGCGGCCAATGGGCGCCTGTACCACCCAGCACCGGAGCGGGCAGGCGGCGTGGGTCTAGTGCGCTCGGCCCTGGCCTTCGAGCTCAGCGCTTGCTTCGAGTATGGACCTAACTCACCCACGGTCCCCTCTCACGTACAGTGGCAAGGTCGGCGTATCGCCCTAACTATGGATCTGGCCCCGCTGCTGCTCGCTGCCCCGCCCCCCTGAGACTCTGGCTGGGGCTGTGTGGGGAGGGTTAGGGCAAACACTGGGTTTTGTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000045765-'2-2,'2-1,6-2
Average complexity
S
Mappability confidence:
100%=83=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149561=DUF4505=PU(13.7=46.3)
A:
PF149561=DUF4505=FE(8.7=100)
C2:
PF149561=DUF4505=PD(76.5=94.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAACCCGCGAGTATTTC
R:
CTCTCTGCCACAAAGCGAGAG
Band lengths:
143-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]