BtaEX6061146 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046031 | C14H8orf82
Description
Bos taurus chromosome 14 open reading frame, human C8orf82 (C14H8orf82), mRNA. [Source:RefSeq mRNA;Acc:NM_001110184]
Coordinates
chr14:1602474-1605012:+
Coord C1 exon
chr14:1602474-1602649
Coord A exon
chr14:1603183-1603231
Coord C2 exon
chr14:1603511-1605012
Length
49 bp
Sequences
Splice sites
3' ss Seq
CACGGTCTGCTTCTCTGCAGCTT
3' ss Score
9.29
5' ss Seq
AAGGTACCG
5' ss Score
9.67
Exon sequences
Seq C1 exon
GGCGCAGGAGGAGGATGTGGGCGATGAGCGGGGCGCTGCGGCCCTGGGCTCTAATCTTGGCGCGGTCCCCGGGAGCCCGGACCTACGCTGGGGGCGGGGGCGTCTCCTACACGCAGGGCCAGAGCCCAGAGCCTCGGACGCGCGAGTACTTTTACTATGTGGATCATCAGGGCCAG
Seq A exon
CTTTTCCTGGACGACTCCAGAATGAAGAACTTCACCACCTGCTTCAAAG
Seq C2 exon
ACCCGCAGTTCCTGGTCATGTTCTTCTCCCGCCTGAGACCCAACCGCAGCGGGCGCTACGAGGCCTACTTCCCTTTCCTCTCGCTCTGCGGCAGGGAACGCAACTTCCTACGCTGCGAAGACCGGCCCGTGGTCTTCACGCACCTTCTGGCCGCGGGCCCCGCGCCCCAGCGCCTCTCCTACTGCGGCGGCGGCGAGGCCCTGGCTGTGCCCTTCGAGCCGGCGCGCCTGCTGCCTCTGGCCACGAATGGGCGTCTCTACCACCCAGCGCCGGAGCGCGCGGGCGGCGTGGGCCTGGTGCGATCGGCCCTGGCCTTCGAGCTCAGCGCTTGCTTCGAGTACGCGCCAGGCGCGCCCGAGCTGCCCTCGCACGTGCGCTGGCAGGGCCGCCGTTTCGCACTCACCATGGACCTGGCCCCACTCCTGCTTGCTGCCCCGCCGCCCTGAACCGCGGGCCAGCAACCGCTGGCACCCGCAGCGCCCCGGGCCGGCGGGCTGCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046031-'2-1,'2-0,4-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149561=DUF4505=PU(13.7=46.3)
A:
PF149561=DUF4505=FE(8.7=100)
C2:
PF149561=DUF4505=PD(76.5=94.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATGTGGATCATCAGGGCCA
R:
CGTAGGAAGTTGCGTTCCCTG
Band lengths:
135-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]