DreEX0001397 @ danRer10
Exon Skipping
Gene
ENSDARG00000075765 | C20H8orf82
Description
chromosome 8 open reading frame 82 [Source:HGNC Symbol;Acc:HGNC:33826]
Coordinates
chr20:52521067-52526905:-
Coord C1 exon
chr20:52526660-52526905
Coord A exon
chr20:52526075-52526123
Coord C2 exon
chr20:52521067-52521595
Length
49 bp
Sequences
Splice sites
3' ss Seq
TATTGTCTTCTCCCATTAAGCTC
3' ss Score
6.32
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TCCGGCGGACAGAACAAACCGCTACATAATATAAACAAAACAGATTTACGCGGAATCTTGCACAGTAATGTTTTTTAATAACAGTGAACGGGTTTTGCTGTAACTAAAGCAGCAATGAGGTTTGTTAAACGGATATTTAGTCGTCAGTGTGGGTTGTTTTGCAGGAATGTGTCCTCATACACACAAGGACAGAGTCCAGAAGCGAGAATTAGAGAGTATTTCTACTATATCGATCATCAAGGACAG
Seq A exon
CTCTTTCTGGATGACACCAAGGTGAAGAACTTTGTCACCTGTTTCAAAG
Seq C2 exon
ACCAGCACTTCTTAGTTTTCTTCTTCAGCCGTCTGAAAGTGAACCAGAGCGGCCGCTATCAGCAGGACTTCCCGTTTGTCTCGCTCTGCGGACGCGAGCGCAACTTCCTGCGTTGCGAGGATCAGCCCATAGTTTTCACTCACCTGTTCTCAGAGGTGGGGCTTGAGGACCGTCTCTCATACTGTGGGGGCGGAGCTAAGCTGAGCGTTCCATTCCGCCCACAATCCCTCTTCATGCATCCAGACAGCGGTAGAGTTTACCATCCCGGGCCGGAGCGGACTGGAGGAGCGGGTCTGCTAAGATCAGCTCTGGCCATTGAGATCAGCGCACATTTTGGGTACGACACAGGACAGGATGGCACAGCAGCACAGCCCACTCACTTCACATGGGCAGGCCGACGACACGCTCTCAGCAAAGAGTTGGAGAAACATTTCCCTGTGCAGAAAGATGAATGCATGAAGATACGGTGATTCAACATGCAAATACACTGTTGAAGTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075765_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF149561=DUF4505=PU(13.4=56.8)
A:
PF149561=DUF4505=FE(8.6=100)
C2:
PF149561=DUF4505=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGGGTTGTTTTGCAGGA
R:
TGGTTCACTTTCAGACGGCTG
Band lengths:
147-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]